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A finite point set in $\mathbb{R}^d$ is in general position if no $d + 1$ points lie on a common hyperplane. Let $α_d(N)$ be the largest integer such that any set of $N$ points in $\mathbb{R}^d$ with no $d + 2$ members on a common hyperplane, contains a subset of size $α_d(N)$ in general position. Using the method of hypergraph containers, Balogh and Solymosi showed that $α_2(N) < N^{5/6 + o(1)}$. In this paper, we also use the container method to obtain new upper bounds for $α_d(N)$ when $d \geq 3$. More precisely, we show that if $d$ is odd, then $α_d(N) < N^{\frac{1}{2} + \frac{1}{2d} + o(1)}$, and if $d$ is even, we have $α_d(N) < N^{\frac{1}{2} + \frac{1}{d-1} + o(1)}$. We also study the classical problem of determining the maximum number $a(d,k,n)$ of points selected from the grid $[n]^d$ such that no $k + 2$ members lie on a $k$-flat. For fixed $d$ and $k$, we show that \begin{equation*} a(d,k,n)\leq O\left(n^{\frac{d}{2\lfloor (k+2)/4\rfloor}(1-\frac{1}{2\lfloor(k+2)/4\rfloor d+1})}\right), \end{equation*} which improves the previously best known bound of $O\left(n^{\frac{d}{\lfloor (k + 2)/2\rfloor}}\right)$ due to Lefmann when $k+2$ is congruent to 0 or 1 mod 4.