论文标题

是什么约束食物网?一个最大的熵框架,用于预测其结构的最小偏见

What constrains food webs? A maximum entropy framework for predicting their structure with minimal biases

论文作者

Banville, Francis, Gravel, Dominique, Poisot, Timothée

论文摘要

食物网是复杂的生态网络,其结构在生态和统计上受到限制,许多网络属性相互关联。尽管在食物网中认识到这些不变的关系,但在网络生态学中最大程度的熵原则(Maxent)的使用仍然很少见。考虑到Maxent是一种精确设计和预测许多不同类型的受约束系统的统计工具,这令人惊讶。确切地说,这一原则断言,受到该系统的先验知识约束的系统属性的最小概率分布是具有最大信息熵的系统。在这里,我们展示了如何使用Maxent来分析和启发式地来得出许多食物 - 网络特性。首先,我们可以使用物种数量和食物网中的相互作用数量来分析地得出联合度分布(网络中每个物种的猎物和捕食者数量的联合概率分布)。其次,我们提出了一种基于模拟退火和SVD熵的网络邻接矩阵(以矩阵格式的网络表示)的启发式和灵活的方法。我们分别使用连接和联合度序列作为统计约束建立了两个启发式模型。我们将两个模型的预测与使用全球陆生和水生食物网的开放访问数据在网络生态学中常用的相应的无效和中性模型进行了比较。我们发现,受联合程度序列约束的启发式模型是对食品WEB结构的许多量度的良好预测指标,尤其是嵌套和基序分布。具体而言,我们的结果表明,陆地和水生食物网的结构主要由它们的联合分布驱动。

Food webs are complex ecological networks whose structure is both ecologically and statistically constrained, with many network properties being correlated with each other. Despite the recognition of these invariable relationships in food webs, the use of the principle of maximum entropy (MaxEnt) in network ecology is still rare. This is surprising considering that MaxEnt is a statistical tool precisely designed for understanding and predicting many different types of constrained systems. Precisely, this principle asserts that the least-biased probability distribution of a system's property, constrained by prior knowledge about that system, is the one with maximum information entropy. Here we show how MaxEnt can be used to derive many food-web properties both analytically and heuristically. First, we show how the joint degree distribution (the joint probability distribution of the numbers of prey and predators for each species in the network) can be derived analytically using the number of species and the number of interactions in food webs. Second, we present a heuristic and flexible approach of finding a network's adjacency matrix (the network's representation in matrix format) based on simulated annealing and SVD entropy. We built two heuristic models using the connectance and the joint degree sequence as statistical constraints, respectively. We compared both models' predictions against corresponding null and neutral models commonly used in network ecology using open access data of terrestrial and aquatic food webs sampled globally. We found that the heuristic model constrained by the joint degree sequence was a good predictor of many measures of food-web structure, especially the nestedness and motifs distribution. Specifically, our results suggest that the structure of terrestrial and aquatic food webs is mainly driven by their joint degree distribution.

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