论文标题

基于图像的大米(Oryza sativa L.)基因型的表型

Image-based phenotyping of diverse Rice (Oryza Sativa L.) Genotypes

论文作者

Vishal, Mukesh Kumar, Tamboli, Dipesh, Patil, Abhijeet, Saluja, Rohit, Banerjee, Biplab, Sethi, Amit, Raju, Dhandapani, Kumar, Sudhir, Sahoo, R N, Chinnusamy, Viswanathan, Adinarayana, J

论文摘要

在气候变化的背景下,在大米(Oryza sativa L.)中开发了抗旱或耐旱的品种(Oryza sativa L.),这是全球至关重要的任务。对于印度,中国和其他亚洲国家等发展中国家,大米是主要的主食食品等发展中国家,需要高产的水稻品种。本研究是为了区分耐旱性和易感基因型而进行的。在受控条件下,总共生长了150种基因型,以评估高吞吐量植物现象设施,Nanaji Deshmukh植物现象中心,印度农业研究 - 印度 - 印度农业研究所,新德里。 150个基因型的子集用于当前研究。为了区分基因型,我们考虑了诸如每植物的叶子数量,植物凸壳的凸壳和凸形船体面积,该植物构成是通过连接叶子尖端形成的,是植物的每单位凸壳的叶子的叶子数量,冠层凸壳,植物的垂直分布 - 垂直散布和植物的水平扩散。我们训练您只看一次(YOLO)深度学习算法的叶子尖端检测并估算稻米植物的叶子数量。通过此提出的框架,我们基于选定的性状筛选了基因型。这些基因型进一步分组在不同的耐旱和干旱和干旱易感基因型的基因型之间,使用病房聚类方法。

Development of either drought-resistant or drought-tolerant varieties in rice (Oryza sativa L.), especially for high yield in the context of climate change, is a crucial task across the world. The need for high yielding rice varieties is a prime concern for developing nations like India, China, and other Asian-African countries where rice is a primary staple food. The present investigation is carried out for discriminating drought tolerant, and susceptible genotypes. A total of 150 genotypes were grown under controlled conditions to evaluate at High Throughput Plant Phenomics facility, Nanaji Deshmukh Plant Phenomics Centre, Indian Council of Agricultural Research-Indian Agricultural Research Institute, New Delhi. A subset of 10 genotypes is taken out of 150 for the current investigation. To discriminate against the genotypes, we considered features such as the number of leaves per plant, the convex hull and convex hull area of a plant-convex hull formed by joining the tips of the leaves, the number of leaves per unit convex hull of a plant, canopy spread - vertical spread, and horizontal spread of a plant. We trained You Only Look Once (YOLO) deep learning algorithm for leaves tips detection and to estimate the number of leaves in a rice plant. With this proposed framework, we screened the genotypes based on selected traits. These genotypes were further grouped among different groupings of drought-tolerant and drought susceptible genotypes using the Ward method of clustering.

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